Dépendances inversées pour bio Latest version of the following gems require bio
bio-polymarker_db_batch 0.5.1
Server for polymarker. To be used with cron
27 690 Téléchargements
sciruby-full 0.2.11
Scientific gems for Ruby. This is the full installation with rigid version constraints.
26 368 Téléchargements
egor 0.9.0
'egor' is a program for calculating environment-specific substitution tables from user ...
26 307 Téléchargements
bio-tm_hmm 0.2.4
A bioruby plugin for interaction with the transmembrane predictor TMHMM
26 142 Téléchargements
bio-velvet 0.6.0
Parser to work with some file formats used in the velvet DNA assembler
26 141 Téléchargements
bio-dbla-classifier 0.7.1
Methods to classify and manipulate PfEMP1 DBL-alpha sequence tags
25 902 Téléchargements
bio-bigbio 0.1.6
Fasta reader, ORF emitter, sequence translation
25 690 Téléchargements
bio-signalp 0.3.1
A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...
25 085 Téléchargements
bio-kmer_counter 0.1.2
A biogem for counting small kmers for fingerprinting nucleotide sequences. See README f...
24 300 Téléchargements
scaffolder 0.5.0
Turns scaffolded contigs and annotations into a genome.
24 196 Téléchargements
scaffolder-test-helpers 0.4.1
Useful Helper methods and classes for testing scaffolder.
23 615 Téléchargements
bio-phyta 0.9.4
Pipeline to remove contaminations from EST libraries
23 240 Téléchargements
npsearch 2.1.8
Search for Neuropeptides based solely on the common neuropeptide markers (e.g. signal p...
22 526 Téléchargements
bio-sambamba 0.0.5
New Sambamba library comes with a command-line tool for working with SAM/BAM files. Thi...
21 388 Téléchargements
bio-fasta_retrieve 0.0.7
Gem that helps to retrieve DNA sequence from UCSC
21 258 Téléchargements
acnfp-trans-counter 0.2.0
A quick and dirty tool for analysis of transition and transversion frequency aross and ...
20 484 Téléchargements
acnfp-trans-counter 0.2.0
A quick and dirty tool for analysis of transition and transversion frequency aross and ...
20 484 Téléchargements
finishm 0.0.9
De-novo assemblies generally only provide draft genomes. FinishM is aimed at improving ...
20 429 Téléchargements
transfuse 0.5.0
See summary
20 190 Téléchargements
semin-ulla 0.9.9.1
'ulla' is a program for calculating environment-specific substitution tables from user ...
19 919 Téléchargements
scaffolder-annotation-locator 0.2.0
Build a genome scaffold using scaffolder and a set of annotated contigs. This tool upda...
19 844 Téléchargements
bio-assembly 0.1.0
bioruby plugin to parse, write, and manipulate assembly data
19 483 Téléchargements
bio-assembly 0.1.0
bioruby plugin to parse, write, and manipulate assembly data
19 483 Téléchargements
bio-isoelectric_point 0.1.3
A bioruby plugin for calculating the isoelectric point of a protein
19 258 Téléchargements
bio-velvet_underground 0.3.1
Bindings to some internals of the velvet assembler.
18 949 Téléchargements
bio-nexml 1.1.0
This plugin reads, writes and generates NeXML
18 802 Téléchargements
orf_finder 0.1.8
ORF Finder is a library that with a sequence of nucletotides it finds the all the p...
17 837 Téléchargements
genfrag 0.0.0.4
This is a development release. Some features are functional at this time. Genfrag allo...
17 305 Téléchargements
bio-cd-hit-report 0.1.0
A Ruby library for reading CD-HIT cluster reports
16 757 Téléchargements
cheripic 1.2.7
a library and commandline tool to pick causative mutation from bulks segregant sequencing
16 571 Téléchargements