bioの被依存関係 以下のgemの最新版はbioを必要としています
bio-genomic-interval 0.1.2
a BioRuby plugin: handling genomic intervals,such as "chr1:123-456", and overlap state ...
16,325 ダウンロード数
dirseq 0.4.3
FPKG (gene expression metric) calculator for metatranscriptomics
16,128 ダウンロード数
bio-graphics 1.4
Library for visualizing genomic regions
15,851 ダウンロード数
neurohmmerapp 0.0.7
A Web App wrapper for NeuroHmmer, a program for validating gene predictions.
15,815 ダウンロード数
bio-plasmoap 0.1.1
The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...
15,786 ダウンロード数
publisci 0.1.6
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
15,217 ダウンロード数
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
14,993 ダウンロード数
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
14,993 ダウンロード数
bio-statsample-timeseries 0.2.1
Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...
14,943 ダウンロード数
bio-krona 0.2.0
This biogem is built around Krona, a flashy way of representing hierarchical data.
14,690 ダウンロード数
bio-bwa 0.2.2
Ruby binding for BWA mapping software, built using Ruby-FFI library
14,442 ダウンロード数
scaffolder-tools 0.1.3
Binary to use with scaffolder genome scaffolds
14,402 ダウンロード数
bio-lazyblastxml 0.4.0
This is very scrappy at the moment, and will need to be seriously cleaned up. It does w...
14,036 ダウンロード数
exodb 0.1.3
A library for exome sequencing data management
13,980 ダウンロード数
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
13,961 ダウンロード数
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
13,961 ダウンロード数
bio-liftover 1.3.0
Simple, under development Ruby solution for UCSC LiftOver tool
13,727 ダウンロード数
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
13,464 ダウンロード数
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
13,464 ダウンロード数
goruby 0.2.0
GoRuby makes it easy to interact with the Gene Ontology by using the infrastructure set...
12,946 ダウンロード数
bio-chembl 0.1.3
BioRuby plugin for ChEMBL REST API Client, Parser and Container classes
12,939 ダウンロード数
bio-rdf 0.0.2
Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...
12,449 ダウンロード数
ruby-ensembl-api 1.0.1
ruby-ensembl-api provides a ruby API to the Ensembl databases (http://www.ensembl.org)
12,342 ダウンロード数
bio-unichem 0.3.0
BioRuby plugin for UniChem REST Web service
12,140 ダウンロード数
bio-synreport 0.1.2
Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...
12,055 ダウンロード数
bio-sra 0.3.1
A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...
11,965 ダウンロード数
SilkSlider 0.2.2
Predict silk-like proteins from its amino acid sequence.
10,685 ダウンロード数
bio-protparam 0.2.0
Bio::Protparam has same interface and function as Bio::Tools::Protparam class of BioPer...
10,581 ダウンロード数
semin-egor 0.9.3
A new ESST generator
10,569 ダウンロード数
bio-biostars-analytics 0.2.0
Ruby script for data-mining biostars.org using web-crawling techniques as well as utili...
10,549 ダウンロード数